Scaffold Ga0118687_10056242

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10056242
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1319
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042421	Metagenome / Metatranscriptome	158	Y
F044788	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100562421	F044788	N/A	SKYGPEPELDLTGNWCLAYGRDRGETGTEAQTFKNISSWVEAEVERWCEYFYLFDGQDWIVSNGKKDSSGCFEFDFLEVAILKEIVN*
Ga0118687_100562426	F042421	AGGAGG	MATELRNVPDCEAQNELTQTRFWGGKNRLTCIQVTLRDPQYDPNNGGSFFNHI