Scaffold Ga0118687_10007164

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10007164
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3744
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048278	Metagenome	148	Y
F071186	Metagenome	122	Y
F091879	Metagenome	107	Y
F106092	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000716410	F091879	N/A	MKQHDLMLLRYMNVQSGNGFSVDKDLDGYNPSREAYAVGGATDSVEMVDNNLLSYNTFQKIMELNIEFMERQPDTSTQVIGAWVNDDNYAFIEVSDIVFDREEAIALGKARGEEAIWDFKNNCEIKLT*
Ga0118687_100071642	F071186	N/A	MSNVDTSKTYWDNEGKYQEQYNAAWKALIPASGEAEDGLPEALRAISRIGYDYYNNGFCNLWQMWEEYDCDGSYNDYTMDSYYKDMVDYLRYQIPLPMHKELEAFLLDAQGYGNWSDKADIIDRIIDHIMEGIVKDGLLEKELVD*
Ga0118687_100071643	F048278	GAG	MDDIIEVIIEFSRMQGQAIDRAQAEALNTAVKKGYDKWQATKQQDNE*
Ga0118687_100071644	F106092	N/A	MKDYDKCHKCGGQGIFLGSHEVGYTYNGYVQIEHDYECEDCRATWEVNFELTPKERDNHG