Scaffold Ga0118687_10005717

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10005717
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4222
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073486	Metagenome	120	Y
F085642	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100057174	F073486	N/A	MADTFQWTGTHVSGSCACAVVRYAGPTNTRGSRWLASIKRDRETTWRASATFDEGPITAALQAVAKGGADWQPVTCHSIDADTYCIGF*
Ga0118687_100057176	F085642	N/A	MLTSQKERKQAAADARELLRQQIRNEKRELRDLRYIAANHTIPPADAEQFWTDLKTLQLEHGKEGVTEFWWSLVPKWEQHQLNRGGGLCPSHLKPQGAPSLTETHKRVAAALERASHNTRTLEASEVFRQAWAMEDGTL*