Scaffold Ga0118687

Basic Information
Taxon OID	3300009124 Open in IMG/M
Scaffold ID	Ga0118687_10000607 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14277
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (65.38%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14277

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (65.38%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Hudson Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	39.54345	Long. (^o)	-72.3998	Alt. (m)	Depth (m)	541.1
Location on Map

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Source Dataset Sampling Location

Location Name

Hudson Canyon, US Atlantic Margin

Coordinates

Lat. (^o)

39.54345

Long. (^o)

-72.3998

Alt. (m)

Depth (m)

541.1

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002564	Metagenome / Metatranscriptome	547	Y
F035288	Metagenome / Metatranscriptome	172	Y
F052478	Metagenome / Metatranscriptome	142	N
F088827	Metagenome / Metatranscriptome	109	N
F091495	Metagenome / Metatranscriptome	107	Y
F099336	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100006071	F052478	N/A	ILAGILIGLYGLAVLLGDREPDGTVREGVAGARKRRQGQSKR*
Ga0118687_1000060712	F002564	GGAGG	MALTISRGTNLVEHHESTPLTSVNDALEVHADSSEFTFAAIVTGGANFTLAFECNFNGGGTWFELDTSKTINSNGQYAYFYTGKPANRIRMRISAISSGTPSVVPIIAVAYHG*
Ga0118687_1000060713	F099336	N/A	MIETVSGGCVHIEIDAEEGTTSATFVFATPSEPAILGCFVSKLAQGIEVLIPIEEVEVDDEDD*
Ga0118687_1000060718	F035288	GAG	MPARKLVDAEGSVKPAATKTNPALPGNAVRKLEDVALEVRRLREEEGLDLQQIGEKLEVSYDVLNQLILQSYKSTMNTPVVFEAQENLRLGQEG*
Ga0118687_100006072	F088827	AGGA	MSLAEFTQRFAPDLAHLVPAFDELDPVICGCTAGPQKPDDPDQRQSFSVCIDNPWGEEQWVTVYSASHCEWWSHGEEYHLSLADLLAYMRQLPKPLHSFSKFQP*
Ga0118687_1000060721	F091495	GAGG	MARRIGTRRNDVRNLGPDALTAINQAARQAALEILNDLGDRSPAYTGEFRDSWVAVPVGTGAGGTAGGEYPYTISDIPELSASRREVARVTKFTIENTQPYAEYALDLKEGRFYPPDEFGPLKPPVQEGSRDAGLTKRGAVTAGPGEAKSTAELDWYVTYANGGGMQDALRRGVKLGFKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0118687_10000607

Overview

Ecosystem & Geography

Associated Families

Sequences