Scaffold Ga0118674_1088713

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118674_1088713

Scaffold Ga0118674_1088713

Overview

Basic Information
Taxon OID	3300009122 Open in IMG/M
Scaffold ID	Ga0118674_1088713 Open in IMG/M
Source Dataset Name	Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C13.But.B IBDA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	695
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location
Location Name	Seattle, WA
Coordinates	Lat. (^o)	47.652555	Long. (^o)	-122.304991	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118674_10887131	F003987	GGAGG	MIPALPCGSFPDGDTPAGAFYVAAFEEGDTPHHVGEYRIETVIQALRALQACGYDDVEIGSIERGGKTHLLLIGLDGEARFGDRQTGCVAVAPVGVE*
Ga0118674_10887132	F004383	N/A	RIRADEYREALAALQREFDERPDVIEIKRLIDRCEEERRTCIEQAKAAGISKQGSFLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAETLLGKAALDDCCEVEVKEIGVSVEYVRSEGSE*

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