NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118674_1066365

Scaffold Ga0118674_1066365


Overview

Basic Information
Taxon OID3300009122 Open in IMG/M
Scaffold IDGa0118674_1066365 Open in IMG/M
Source Dataset NameSyntrophic microbial communities from biogas reactors in Seattle, WA - R1.C13.But.B IBDA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)837
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location
Location NameSeattle, WA
CoordinatesLat. (o)47.652555Long. (o)-122.304991Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004383Metagenome / Metatranscriptome440Y
F075034Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0118674_10663651F004383GAGMDPAECGHAVLPADDNLLERAFMARIRADEYQQELNRLQKEFNERPDVIEIKRRIERCEEERRQCIAQAKSAGISKMGNYLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDDCCEVEVKEI
Ga0118674_10663653F075034N/AGLPGRADRMIACRSCGAPTASSDGICRDCADAMRAERSEVLSALCRIHRVRRVEDLPVSVLQEMQAEWGRC*
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