Scaffold Ga0117941_1038956

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117941_1038956

Scaffold Ga0117941_1038956

Overview

Basic Information
Taxon OID	3300009120 Open in IMG/M
Scaffold ID	Ga0117941_1038956 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Tanners Lake, St. Paul, MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1263
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location Name	Tanners Lake, St. Paul, MN
Coordinates	Lat. (^o)	44.953471	Long. (^o)	-92.97875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002568	Metagenome / Metatranscriptome	547	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117941_10389562	F002568	AGGAGG	MKNPPILISVVGFFAALAGFGWLFFGLRVVGFDWFGALGDLPAFEDVGIWGWLAIGTGILWILIAVGLWALQPWAWLTAMIIAGLSLFEAVLAFFQFPGSGIGLAMGLLPLVMLFYLNSTGVKVAFGMKDPPPPAA*

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