Scaffold Ga0117941_1015561

Overview

Basic Information

• Taxon OID: 3300009120
• Scaffold ID: Ga0117941_1015561
• Source Dataset Name: Lake sediment microbial communities from Tanners Lake, St. Paul, MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2015
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location

• Location Name: Tanners Lake, St. Paul, MN
• Coordinates
  • Lat. (^o): 44.953471
  • Long. (^o): -92.97875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034230	Metagenome / Metatranscriptome	175	Y
F045836	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117941_10155611	F034230	GGAGG	MRKDLLVFMLAGVFLIGIAAMAEVAEAGPENDKLKVKVGPFFIQESEKKINLEGTASHVVRKGKRINITVTVENYGKEKSEPVRLRYVETGKKAGEPRYYKVQAIEPGKKWERTFMARFDESGRKSVTATLLTLESQPLADEKGKPRPDTSHTGSVNLTVKEM*
Ga0117941_10155613	F045836	AGGAG	MDNPNLFTALAYYTVSGFLDPIQWLICGICGWSVERLDQAMIAGAAMVSVLYIAMAAFYPDGKLFSFPTPHVGIAILGKAIGAVLMTGLIYWLKQRQLTRKTRS*