Scaffold Ga0117941

Basic Information
Taxon OID	3300009120 Open in IMG/M
Scaffold ID	Ga0117941_1005460 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Tanners Lake, St. Paul, MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009120 Open in IMG/M

Scaffold ID

Ga0117941_1005460 Open in IMG/M

Source Dataset Name

Lake sediment microbial communities from Tanners Lake, St. Paul, MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3676
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3676

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location Name	Tanners Lake, St. Paul, MN
Coordinates	Lat. (^o)	44.953471	Long. (^o)	-92.97875	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Tanners Lake, St. Paul, MN

Coordinates

Lat. (^o)

44.953471

Long. (^o)

-92.97875

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0117941_10054601	F005740	GAG	MKLIVQDIRSTIARVIGVCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNSGDACVGKQLVDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFTQLTGVIREATNTASRLYEYDATALSELDLAVYDPDETLPQYRRSLLTDRCHNDEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
Ga0117941_10054603	F012111	AGG	MSERAPRRYTDGSVTFDGGIDSGVMPSEVDKNQVAFAVNANFREGFISPRPGFVQKDYDLCVTITADNAEITADQTNVTADGWSEECYGPQGLTGTFQCALPYISDDGRTFILLLISGKVWLYDCLQNKAQNLTTSPDLENPSNLLDGWMVQAENFAVIQDGFSKPLIFNGTSLRRAKDDEIKTGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFSVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAIDGIRSFIIARRSFNDWGNTPISGEMTPIVENDQSNLLWASSAVVFDNRVLMTSQPRFNSEGVIHKAISVLDMELVTSMRKKAPPAWAGIWTGLNILQLVKTENAYGDACFAIARGSDDSIQIWEITKSEKFDMNLSEVPKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDRLEGDVSFNVTYRPDQYPGWIDWIDFAECATVTQCFDLCPLTNFKPQYRPKMRFPTPSDAPCNATISTPARNLYEVQVMLNIIGYCRVKSLRVHAYDIQESSVGECRTVFPACTPLDVCDINPLTYTSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0117941_1005460

Overview

Ecosystem & Geography

Associated Families

Sequences