Scaffold Ga0117938_105169

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117938_105169

Scaffold Ga0117938_105169

Overview

Basic Information
Taxon OID	3300009119 Open in IMG/M
Scaffold ID	Ga0117938_105169 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Leach Lake, MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	908
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location Name	Leech Lake, MN
Coordinates	Lat. (^o)	47.18868	Long. (^o)	-94.626271	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080207	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117938_1051693	F080207	GAG	MTMRKTSIVIALCLVLVGTLTATAGATATPTDGSAIQRFDIAVGDYKYGELAVDTETDHVFAYANVGSESADKQVTLVARKDRSSPHTIDIAHSIVNSDGQVFWKGTLTAAQLDWIHTYGGRAVFFFRVNHSLF*

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