Scaffold Ga0117940_110700

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117940_110700

Scaffold Ga0117940_110700

Overview

Basic Information
Taxon OID	3300009118 Open in IMG/M
Scaffold ID	Ga0117940_110700 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Pelican Lake, MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	658
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location Name	Pelican Lake, Minnesota, USA
Coordinates	Lat. (^o)	46.612069	Long. (^o)	-94.156828	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079367	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117940_1107001	F079367	AGGAGG	MKTPFTRGGVAGDKSRHKDDIAWWMSRYESLCTTQAEDIVRKAMAKLNDAVALRDQALDLVAQLDQDISEAEHEITRLGGATFIEKSEPMIEELKVYFDNLYESLKRSRPEEVTLAARRGRKLE*

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