Scaffold Ga0115026_10916235

Overview

Basic Information

• Taxon OID: 3300009111
• Scaffold ID: Ga0115026_10916235
• Source Dataset Name: Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 694
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location

• Location Name: Old Woman Creek National Estuarine Research Reserve, Ohio, USA
• Coordinates
  • Lat. (^o): 41.2239
  • Long. (^o): -82.3039
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015523	Metagenome / Metatranscriptome	254	Y
F035895	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115026_109162351	F015523	N/A	LFQGQAAPANQIHDFHPPISPSGLYWVVPVPKGGLIISPDGQTATLEMKDVAVVDQPEWPALDAVGMPAIMSFRMIWNATDEKIIYDDPQKQFRVEGYRATAQLEAQVEVPSIDFSWKSDPLSESHANFAIIGDEVNGRYYNPMK*
Ga0115026_109162352	F035895	N/A	GTDNKGNRIAFGTPTTDYGFMQGEYFAGRAPQTGTFTHI*