Scaffold Ga0117920_1038823

Overview

Basic Information

• Taxon OID: 3300009108
• Scaffold ID: Ga0117920_1038823
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2326
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F019751	Metagenome / Metatranscriptome	228	N
F065664	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117920_10388231	F065664	N/A	MAGVAEIMCEYGAGDKVLQLQQFDTMGFYEYYGVTETFKDLQSLIKRAEDIHTSYDKIVIHDYSEFKLNFPKNKVVLIFHGSKLRSMEQTEVEAVKEYPCFVTTSDLLEKLPFATHLPAPVDRELFKKDVEGYGWISINRSYQRDIVEKRIREKYPDIQYYERNPGSIIRYEDMPDFLSQYKHYVDWKFTNDADPLSLPDPSCTGIQALALGLTVHDKDGGTLSQHLLLIHDAKRVCERFIDEII*
Ga0117920_10388232	F011190	GAGG	MKLFDGFIKGLKKSFSGEDYLREINTCRRCGKPCFFDSCLKCETDEAYRGWGKKNEK*
Ga0117920_10388233	F019751	N/A	VSLKQDTAEAYRNARNVSLTRTRGPDLSKEFHDYIFNQWMFFSENAYGISNKINKSTELMSKFGKTSPAGVHYHIKQIEKDLENSISEDAMDTYIGEFMRARTGFEHDVADIQTLMSHEKEKGLEDMDKELYLKMARFRHEIKLDSFKMLQDSALPLQVKKLKMEREKLRPAKPMPKVEDNGVS*