Scaffold Ga0117902_1124153

Overview

Basic Information

• Taxon OID: 3300009104
• Scaffold ID: Ga0117902_1124153
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2751
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F010572	Metagenome	302	N
F065131	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117902_11241531	F065131	N/A	ANIRQWHHTLDTQQLLDADEAGDDDLRLTKPTLDNSHELQTG*
Ga0117902_11241534	F004336	GAG	MKFIRNMLFSTGRYPSTMGAGGQQDVDFCRYIEWMWFKRCMWLLGIGFGFGGVGLYIGYYYEEVVLEYGMAVWGIAWLYNGFLLFVMAVSIVLSMLKALVVKAFVSPEVQVGQAATRTAQMMRKGGL*
Ga0117902_11241537	F010572	GGAGG	MTGYHGSPAGYMNPVAVDKIQHPDYDAKASENMTMRVVQYLYPILKNSVEMLEALCKETDVQVPTDLADNMEWLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWATEDNSHHSVLNWQNP