Scaffold Ga0105245_10002209

Overview

Basic Information

• Taxon OID: 3300009098
• Scaffold ID: Ga0105245_10002209
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17634
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010881	Metagenome / Metatranscriptome	298	Y
F023476	Metagenome / Metatranscriptome	210	Y
F059416	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105245_1000220912	F023476	GAG	MSRQIWKVALMCVVISTAVFGFYKAHQPTPAEQKALTKYTTVMNKVLDQFRSPDWDEKIDATIDHPTVDTFGDRPMDIDQLLKRTYEVRKDSKRYKTLVEPRLQKNAAEKDIEKKQLEAARIEDLQHLQVQVHFNMLVVSMITGPDPKVDPKIPGATFVHKDRNNPFSHGVAYVLFFSNGKLGRWEEVNDVYRNFFVHKPDTPFIENIEVRIFGPEDRIKELLHKIDWQQVNTALTM*
Ga0105245_1000220917	F010881	GAGG	MVRFQCESCGRLKDSGETWVLGFAAENIGVTSARREISIASSWDRPRAVEALAVHFCSDECRATYMNALFGDTPQTLDGNTTSTKRRIKRLVPGAVVDTVVAEKSRPKAKRRTTVVRRKIA*
Ga0105245_1000220919	F059416	AGGAG	MTTIDAGMNQNQIQRSLVPMLRTWTRSIGWTVLLSAALAVLFALLCDGCSSIH*