Scaffold Ga0111539_10076808

Overview

Basic Information

• Taxon OID: 3300009094
• Scaffold ID: Ga0111539_10076808
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3932
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004499	Metagenome / Metatranscriptome	435	Y
F006187	Metagenome / Metatranscriptome	379	Y
F088441	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_100768081	F088441	N/A	VAMPPGTYSLDVLKTGFEAPSRVLDVYGDVTVEVEVAAIPQENPDAYWLFDPTKRV*
Ga0111539_100768082	F004499	GGAG	MRTKKTVAAVVIVGLLSLAAAAGAANDEKTITGVISKVDPATRIATITPASGAPIVVQFAFNAGGPCSSCLGSGRSGPTFAETMTEGSTWTLTYTSSIPEGTATWFPGGTVNTVYRAVPVKSK*
Ga0111539_100768083	F006187	AGGA	MSRLSGAAIALGVLLAITAVPGAARAECYLENVASAQEIAAGWTIHEDHRIVKQVDSVPYEQDGRGNWFVDRETTTLPICSVFDDLGGYSLRSYMLQPVAAKTKVKICQATAEGGSRPFVPPDAKPQPADTAHEVYQRYDRPYAGPCPPALRTPPASTAQEATSQKK*