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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009094 Open in IMG/M |
| Scaffold ID | Ga0111539_10051809 Open in IMG/M |
| Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4887 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Tennessee | |||||||
| Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012128 | Metagenome / Metatranscriptome | 283 | Y |
| F020185 | Metagenome / Metatranscriptome | 225 | Y |
| F070168 | Metagenome / Metatranscriptome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0111539_100518091 | F070168 | N/A | TAGGPLALRGYGADELLARSRAIGRIELRNDYWTGLDWNLLHWTTVRGFGGTLFADVAAIGTCETLAFARDRVYFDVGYSLRVLHDSFGIHQQLLSIDVAVPLNRHDPYATCLGIPRAAVDRPPFTVLVSFFPSF* |
| Ga0111539_100518093 | F012128 | GGA | MERLRELRGPDTRERDLANILGFEHSRAVRWKEGQMYVDRAEYLVRLADALDVEPMLLVAMASGTLTVEQAHRQISGAGKGDDGKRRRGAARAEPLEVASDASLFALDASKFDGGRGVVLLIASNGEGRSELGEALGRHTDVGGMVAGSLSMGLCLAERYRPELVFIDLGVANVQAFDACHVLASLSTKAQRRCRVIAGTATVTDAVEKPALMAGAANVTLFPFTLGLFESELGRLEERLGPRKTLRRA* |
| Ga0111539_100518094 | F020185 | N/A | MPRARSVGLLFVGVVSASVACSIAIRRDLAAVPAGQVGFDDMCGLQEYFDALEIKSARPPRVVSALELEGASAGKRVRGGKERFAFENDFQLKHLRRILNENWRRLPESVEAADKIEIEVKWSEKVGAKRVVTDEDAAMTIGTETFSLPYHVCLSELIYGEPLYRQRRAMWGLPLPGMPARPAGDGGAPAPDGRASDGGRPDAARSDR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |