Scaffold Ga0111539_10026368

Overview

Basic Information

• Taxon OID: 3300009094
• Scaffold ID: Ga0111539_10026368
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7106
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017538	Metagenome / Metatranscriptome	240	Y
F044475	Metagenome / Metatranscriptome	154	Y
F090480	Metagenome / Metatranscriptome	108	Y
F099400	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_100263683	F017538	N/A	MATSLTLIRASRNRDGEWSSDDYDVFEGKQLVGRITLMPQAPEGRPWFWTVTARPEGSQNQGYAVSREQALLEFKARWLNPARS*
Ga0111539_100263684	F090480	N/A	MIICIALAAASGLSVAGAKAMPLVPTGAERATLVIPIADGCGFNRYRDARGICRKKYVITRQQGRQPVYTGCGGINSHRVCNLYGHCWMVCD*
Ga0111539_100263686	F044475	GGAG	MPLLAYFLVMGILLFTGLVLVSGQLESKSLPVSQRVGVPPPFKAQPDANGSPAGTVNSAVE*
Ga0111539_100263687	F099400	N/A	MRMLVWIVGLLALATSLDASLNDGIYTRAFVSMIQDFPATVGLNRIG*