NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105240_10031031

Scaffold Ga0105240_10031031


Overview

Basic Information
Taxon OID3300009093 Open in IMG/M
Scaffold IDGa0105240_10031031 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6936
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005312Metagenome / Metatranscriptome405Y
F009363Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0105240_100310312F009363GGAGGLSARICPHCKTEISAANVAAYSNDVVCPTCGSRLEVASGSRILASVAGLIAGAIAWKLSINASGDLGAVLPTLYAFLAFGVVSPLVLMFTGNLSNAPEIPVAEPSHAASGGGHGAGHH*
Ga0105240_100310313F005312N/AMARYSTLLGCRIVVTYRAGDIVLPATGNLAADSGKSIFLEEHYQQKGSVKTFRWEIPYPCILELSECPEGPRPSASLNSPRETATDPSASPGSLQFKKNLA*

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