Scaffold Ga0099827_10053032

Overview

Basic Information

• Taxon OID: 3300009090
• Scaffold ID: Ga0099827_10053032
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3058
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004116	Metagenome / Metatranscriptome	452	Y
F005884	Metagenome / Metatranscriptome	387	Y
F014242	Metagenome / Metatranscriptome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099827_100530321	F004116	N/A	ILRTRRNYFIDGIYWGDDEEGVILYLRAKGVSPDDITKALAEVAQAGRYLIQHGEIRQPVL*
Ga0099827_100530322	F014242	AGGAG	MNEQRKVPMDKVGTIHGDVWSEVRNSHSRHIYLILTQPALGSEAWVTQIFSLVHKKALLGLLTFTVMDFNRPLATFRRMNKEAGTHLHAQIRRIVTQEKENEWCAFLPSPTPPAGFSEVAQHRRRKNFETDTLPRHD*
Ga0099827_100530323	F005884	AGGA	MSEPTQELIASELRRRVRVSIAELIQVLGLQVASILPQEIQRMKESGLVVYDEPLGPSSVLSLPR*