Scaffold Ga0099828_10193807

Overview

Basic Information

• Taxon OID: 3300009089
• Scaffold ID: Ga0099828_10193807
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1812
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001875	Metagenome / Metatranscriptome	623	Y
F073745	Metagenome / Metatranscriptome	120	Y
F094292	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099828_101938071	F073745	GAGG	MSEPMSDPMRRQRTSGRRLTTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLEPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0099828_101938072	F001875	AGGAG	MTETNKARDLVATLGGVDEIASQAERIRDSVAALGALWQREDTSVGIEMFVDAAVDLLEAFRALDAGILDVQAEVDTLEAEMGDDADGQQA*
Ga0099828_101938073	F094292	AGGAG	MSKRTRARGLIQFGKGMKPEKLVSYAEFNDGDGPQPVVCQRCADGPPVVASVRDVCVRCLAAVWMSRATDEAMTHMRQPEILCMQCVAMDLERGRP*