Scaffold Ga0099828_10000144

Overview

Basic Information

• Taxon OID: 3300009089
• Scaffold ID: Ga0099828_10000144
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38888
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (60.98%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005700	Metagenome / Metatranscriptome	392	N
F007216	Metagenome / Metatranscriptome	355	Y
F007915	Metagenome / Metatranscriptome	342	Y
F009672	Metagenome / Metatranscriptome	314	N
F022852	Metagenome / Metatranscriptome	212	N
F023823	Metagenome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099828_1000014412	F007216	N/A	MYFCPEVATLLEAWSRLKSRKSLLIYEGIVFAWIGLNLASPNLFLPFTLVLLSVATVYPTGLFLLARRRAKPSHVKNSLAILSVTWALFVTVGTLLFALGAQPPVLPVSVPYGWEIAFVTSSVLFFLMSTTDAFTLSSVRFSSGQHISDTIVKPGHRYLILHDSGKRAISFLSSTLRGLIDSGAKIFINAASNGWLVGNLSQLESHFSEWKENGRVIVSETVTGHNVPHEGLYDRLSFGPTTTVFVNELGQESLSGVVSPPSNVTDEKHQEPAEIFLLESSKAPRPQLTEFLRRNTGMELLNLSESTDPFSSMVELDHQKIRGSIILLEYDSNSDYEDAVDKFLAEGISNAELCVLFTTKSSRLYRAIKGKRMIKIIAASSLISVPDELPDGEMQIPDKELGLVAAVLSDYIDNSKNSGASFVFDSITELIRGERWEQIYSGIKQLIDLLSVPNATALFLANVNTMEPRFLGALHGAFALQLRLNNEGLRAMKIPCN*
Ga0099828_1000014421	F009672	N/A	VAGIGFFFGQLTPFDITPFTLLLHLVLALAVSTWILNLRVRISPDRKPLLAIGVAIVVGSIWSSVQQWVGYFQTGMVSDIMLLAGATVMDVAGGCVIYSLFHLNVLKK*
Ga0099828_1000014427	F022852	N/A	MSGLTVTIPYSVRISRELLDEMRRLYDRMEPPKPTFSAVLSHVVKLGWDSYKAQKNGEVTLQKVTVATYPKRIHDQTFQR*
Ga0099828_1000014429	F023823	GGAGG	MSSEVRNAFDQALVDSTIAALDALGPTVKESIFLLLQRRNSISPNEIPKLVAEFVKALQDVLGPTSRVVEKLIVAGLIARKQVPASVAQGRRLLEVVGAVRLSQITRS*
Ga0099828_1000014440	F005700	GGA	LTYRTEYTLGFLALLPLLATGVAKGTGWLVTIIVVYVGVPLLIWSLLVDRLASIVLRVICRLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTQVNLQNPQNIVIVSNEFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGSLDKAVSLGFTLLISLLPSCILAPTLFYRRLEPGIITKIRSSKAAITMARLFPQVSSPSLPPSSAPTLRSVRVTEDTKETAQPHS*
Ga0099828_1000014441	F007915	N/A	MSLAETAKPALPSSTIRSYAMIGIVLYAFGLVLNEIGNGLTQLWLVPYADTISALGFVIALYTAALAGLGTRLTVLIGLIYGIGIFYVSEPDATYAASGIKIGSFNMTHDVGLGLIGFTMIFLIGLAFYLTRVKRAHTAQPKTDPGSST*