Scaffold Ga0105103_10006400

Overview

Basic Information

• Taxon OID: 3300009085
• Scaffold ID: Ga0105103_10006400
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5755
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063494	Metagenome / Metatranscriptome	129	N
F090287	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105103_100064002	F090287	AGGAGG	MPALTSQEIASLSGCFDCLSPGIKDTYMVTLLNQILAAAPGAPLTTTSPGGLLTATATSAANPLRRKFTLQNQKNEELFVKFGTGATTSNYHIVLPAHNTGNKHSDALMLDGYIGAISVAATAGSPSYTFAEFV*
Ga0105103_100064008	F063494	N/A	VNNPTLRANTITQALTQTAPKHLSPEATYRFYERLGMICGSNPPTPEQLQTALLEANEYDLNSED*