Scaffold Ga0105099_10027777

Overview

Basic Information

• Taxon OID: 3300009082
• Scaffold ID: Ga0105099_10027777
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2908
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003456	Metagenome / Metatranscriptome	485	Y
F015731	Metagenome / Metatranscriptome	252	Y
F033806	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105099_100277773	F033806	AGG	MNFEKQPRDPLFSIHNHSDGHIALYLEEQDAVKDLVQDIVGAYELDDLDLLRHSADRSVKAENYFEHLDNARDNLGENAPLVCNMTEKEALILAEDLIRAVKFARISREAGTTYPSLKAVK*
Ga0105099_100277774	F003456	AGGCGG	MANPNGRKGAKFETDVMRWLRSAGAMCERLVKAGKHDEGDIVAIIAGKQYILELKNWGKPNLPQFWREAEVEAENYAKARGLTEVPLHYVILKRRSAGIEQSWVIQDLQQWLDEKH*
Ga0105099_100277777	F015731	N/A	MGVNMSVEIETGVVDFDANTAAWLEQYKNAVAKIKELQEVADVARAHIEAALGDNQMGMFLNKPVVRWSFVESTRFDTKRAREILPAQVIEALEVKSTSRRFSIVNED