NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105098_10347261

Scaffold Ga0105098_10347261


Overview

Basic Information
Taxon OID3300009081 Open in IMG/M
Scaffold IDGa0105098_10347261 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004838Metagenome / Metatranscriptome421Y
F041159Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0105098_103472611F041159N/AMSQVGKLGYVDSKLGAPTSGQQTTRILFNTIEVPGTTSSLSFFKNFQ
Ga0105098_103472612F004838N/AYVANKLGLSSLGQMQGSTGAVYDVDTDLSGQIFTSASRHQNPGVTNVTENQFEVNEALLVENITFYVRNAGGNTINFQQAYGSNAVIVYDLVIGNKRVMKDTPVFASGTPYTFANAANTNSLSGETQVSGFYPRHQVFMEGAGILIPPQVQWYIDYRVFNVVTGATIATGDDAAIGCYLFGTRVLLNFNTTI*

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