Scaffold Ga0105098_10000591

Overview

Basic Information

• Taxon OID: 3300009081
• Scaffold ID: Ga0105098_10000591
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12696
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004762	Metagenome / Metatranscriptome	424	Y
F007029	Metagenome / Metatranscriptome	359	Y
F023592	Metagenome / Metatranscriptome	209	Y
F027413	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105098_1000059110	F027413	AGG	MSAWLPEWKIIIGTTVYDTVLSVTMATGRDDIDLQCNAGYARMEIVNVNNTAFDIDVTDSLTLELKNSAGVYVPVFGGTVSDFGISVRSPEETGFITIGNILAVGSLAKLTKALFPDALPKTEDGNQIYDILNELLINSWFEVAPALQWANYDPTTTWADAENVGLGEIDQPGLYEMSSRSADPFSSYNLCAQIAQSALGNIYEDKEGRVCYADADHRTAYLSANGYTTLSANYAIPSSVKSILQIGKIRNSLVFNYGNNYNSQATAIDLDSVANYGRYQRSVSSNLHNLTDVEDVMDRELGLRAIPREQLQSVTFRLDNGALPDAERDKLIDVFFGEPIVLNDLPINMFNGSFNGFVEGFAIRATPQFVDLTLTLSPTDFSLVAPQWDTVSPPSLIWTGVNATLEWENAFGGLT*
Ga0105098_1000059112	F004762	AGG	MATSGQVLGMLIPNGGYVATGYDYEGIQFIECEPITKAQFTAGFAQYDAWKAEKDANLIAAKAAAEAKLAALGLTGDDLKALGL*
Ga0105098_1000059117	F023592	N/A	MDILIGLAACGMGFMFMVIGYSIGFKHGHGEGFVRGRAIAQALKDKELI*
Ga0105098_1000059118	F007029	AGGAG	MGFLDNYEDVNARIKRFRAEYPSGRLCATIEHLDIQAGTILVRAEAYREYEDEKPSAVDYAFGNVSTYPNNMKKWFIEDTLTSSYGRVIGLLTPSLEFNSRPTVQDMQKVETLPADSDPWSTKAAIEDMPTMASAIGEIEQSLGGALVAEPPRCSHGTMVWAEGTAKSTGKPWAAYKCTEKNRASQCNPYWHVLGSDGKWKPQV*