NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115550_1253880

Scaffold Ga0115550_1253880


Overview

Basic Information
Taxon OID3300009076 Open in IMG/M
Scaffold IDGa0115550_1253880 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)575
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006728Metagenome / Metatranscriptome366Y
F037990Metagenome167N

Sequences

Protein IDFamilyRBSSequence
Ga0115550_12538801F006728N/ALDFNNIVVRHNGRTISIAQHWSRTSEGDFLNAQEIADIDDLHHCEDYDPIRFDDTVDGLINALQAIKKDIDL*
Ga0115550_12538802F037990AGAAGGMKFDKPTARKIRDAMQEALDKADVNGVTIEVGNCSFTEGEATYKVKVLIDGAKSRDEEALEQMATLMGLNTYKIATLQGMMVSLVSYNSRARKRPWVVQDLTTTQKYIIDDRTAKRLFK

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