Basic Information | |
---|---|
Taxon OID | 3300009076 Open in IMG/M |
Scaffold ID | Ga0115550_1088330 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1168 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F025174 | Metagenome / Metatranscriptome | 203 | N |
F031468 | Metagenome / Metatranscriptome | 182 | Y |
F033361 | Metagenome / Metatranscriptome | 177 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115550_10883302 | F031468 | GAG | MKITIEVDGADAEELVALVQRAAEAVEKLEAILQEFEDADKV* |
Ga0115550_10883303 | F033361 | AGGAG | MLIKCNAADHAYLIKDDPVRPKLFKDNSVRFEGPFRVYAEINDETGEIAAVVCVIVCKFVPQDEYQIKLIAMGKTKQIEEQLREREEMHGELGTVLCPYSVWSYQRGHGRKLINNLLEAAPILHPEVDAVITMSPHTDTAMRFHINNGADIFSTSIDCVNYEYGVPDVILH* |
Ga0115550_10883304 | F025174 | GAG | MSYFTDPMAALEEAEYIAKEEKRTMCVVEVEPNMIVVVSKKTALELGGIILETCVPFEENHNIYD* |
⦗Top⦘ |