Scaffold Ga0115550_1088330

Overview

Basic Information

• Taxon OID: 3300009076
• Scaffold ID: Ga0115550_1088330
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1168
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025174	Metagenome / Metatranscriptome	203	N
F031468	Metagenome / Metatranscriptome	182	Y
F033361	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115550_10883302	F031468	GAG	MKITIEVDGADAEELVALVQRAAEAVEKLEAILQEFEDADKV*
Ga0115550_10883303	F033361	AGGAG	MLIKCNAADHAYLIKDDPVRPKLFKDNSVRFEGPFRVYAEINDETGEIAAVVCVIVCKFVPQDEYQIKLIAMGKTKQIEEQLREREEMHGELGTVLCPYSVWSYQRGHGRKLINNLLEAAPILHPEVDAVITMSPHTDTAMRFHINNGADIFSTSIDCVNYEYGVPDVILH*
Ga0115550_10883304	F025174	GAG	MSYFTDPMAALEEAEYIAKEEKRTMCVVEVEPNMIVVVSKKTALELGGIILETCVPFEENHNIYD*