Scaffold Ga0115550_1038901

Overview

Basic Information

• Taxon OID: 3300009076
• Scaffold ID: Ga0115550_1038901
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2039
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010834	Metagenome / Metatranscriptome	298	Y
F081234	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115550_10389012	F010834	AGGA	MKKDLTLHLKLPKTISLNALYAGKHWTFRKKIKDEYKKIVEAELARYDHHIAESMSIHIRYNTRADVDNLVLVSKFTADTLVANEWIADDNPKHYNRLTITFDQSVEKNYCEVEVRLKNAYERD*
Ga0115550_10389014	F081234	N/A	MSVKDQYIDLCEARVDALVNEVRLLKEFIIRDYAAKGISGTMAMDIFKEFKKNNEDNSQD