Scaffold Ga0115550_1003113

Overview

Basic Information

• Taxon OID: 3300009076
• Scaffold ID: Ga0115550_1003113
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10966
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F008577	Metagenome / Metatranscriptome	331	Y
F029758	Metagenome / Metatranscriptome	187	Y
F059342	Metagenome / Metatranscriptome	134	N
F067108	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115550_100311310	F067108	N/A	MSKIKKVDENVDFSVFTKFTKDLGLFQVNASVWSMVSQDCTHSHDISDIELGFSINNKPCKYLGFQELYEKLYGKSTFNQFRADLTTEFEEEYFKQSPYKTK*
Ga0115550_100311311	F001217	N/A	MSATKFNGFEKYFIQTALRSAIEQAEVDVLAAEADGKRSIYAPGYFSMVGNEIIHKVNRMTLKKYQD*
Ga0115550_100311312	F059342	N/A	MSKTKYHGYTDFNTWRVFHDTLSDIDFESKVTADELEEISLGVVLSNFEMERGSHLMEEYARLFIELADFEDIADSINYDIK*
Ga0115550_10031136	F008577	N/A	MKLTWEETKEIANRLDEIIGNNFHDAMYNVIWERNSDEEVEVSDEDIIAIKEQLKRILC*
Ga0115550_10031138	F029758	AGGAG	MRTNDRLNAVEHTWCEESDRWIYIERYASGYLGLNFMQGDEYDYFKKNWCEIDKGMSEFYSTMKNDLMKLRVEMSELEFIDKVMWIYFESKINIERYK*