Scaffold Ga0115549_1215977

Overview

Basic Information

• Taxon OID: 3300009074
• Scaffold ID: Ga0115549_1215977
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 610
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005454	Metagenome / Metatranscriptome	400	Y
F022015	Metagenome / Metatranscriptome	216	Y
F036489	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_12159771	F022015	N/A	TNKNITMYYQSKSNITWKQAFAEVNASVLKHEIICAIASEVAGKSVENLIGFTNEQRDLVWNDYYNTTELCE*
Ga0115549_12159772	F005454	N/A	MRIIKHFNPNFPERETYKCTIRYTTKFGTLDEVNQWRDDQLKNEDYYKSLEESNTKAAGVFYQTLTYKND*
Ga0115549_12159773	F036489	N/A	MNKNFKNVVFTTMIGLCTFQIGVIWKQKQVNQVNEWRESIVESYILRTDDGMMLGYNINILD