Basic Information | |
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Taxon OID | 3300009074 Open in IMG/M |
Scaffold ID | Ga0115549_1023359 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2422 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001728 | Metagenome / Metatranscriptome | 645 | Y |
F027845 | Metagenome / Metatranscriptome | 193 | Y |
F039623 | Metagenome / Metatranscriptome | 163 | N |
F103244 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0115549_10233591 | F039623 | N/A | NTITFKKFKCLRTNQIYEVVQTECTGRYINNAIDTLVRSDGLRKSFARAELRTRFSNIEGIPEKDYLTKKKKKR* |
Ga0115549_10233593 | F027845 | N/A | MTQAEIIELVRDIHPEVDHEGVDIVYDNGNYDVDVRFTSWDCLFTVEIYSKSSEIPLELTSRTMTELFDYTVDLHTEYMRDLVNLEETRDYLDIYEK* |
Ga0115549_10233596 | F103244 | AGAAG | MRIEDLTSYENDKSKVTVFMETDTDGSYHFLKHIEEKGSDNEQLIRYSLEVFLAEYYLIEKFIKDNLVEDRKFFKQVMNLKASRNE* |
Ga0115549_10233597 | F001728 | N/A | MNNIELRKTKKDHYKLLLNGTDVTGEQERSTFRHIIQVIDNGINTGI* |
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