Scaffold Ga0115549_1016078

Overview

Basic Information

• Taxon OID: 3300009074
• Scaffold ID: Ga0115549_1016078
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3091
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018905	Metagenome / Metatranscriptome	232	Y
F022883	Metagenome / Metatranscriptome	212	Y
F053882	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_10160785	F022883	N/A	MNETIQKLRDYASLKNDWYINRQLNILEKQIALEITKAEINQVTELKNFINK*
Ga0115549_10160787	F053882	N/A	MKNLKFKTVTIYVQGANGEMFEYHKNNEYKNTTKEDVIKIFDLEPLHYATKLENVNLGKSFNTYNWGAPFTLCGVAPEDIYDGVALVNIHLGGDARGNYSEPYICDEPEAIFSQTTYLDIELSDGQIFSFCCDNSEAYFDFDTLDPYYIDFDKNITKEQLEELTEKNKLY*
Ga0115549_10160788	F018905	N/A	MTNKYKISLTLLFKLSNTKKVFILFNVENNTIKDYILTNDLTRYRLKYQSFKLVEIIKPQINKLTIEI*