Scaffold Ga0115566_10007807

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10007807
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8290
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000413	Metagenome / Metatranscriptome	1169	Y
F018008	Metagenome / Metatranscriptome	237	Y
F021862	Metagenome	217	Y
F080524	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1000780710	F018008	AGG	MEFLNSKKFIIMMLIVLVWMAVSSCSPSEYPDKQAPHETTKELNDKITKEMDAMDKEQAMNDNPGPTNFEGIVDVLGCMFDPSDCPLKKSKEEQKMDR*
Ga0115566_1000780712	F021862	GGAGG	MFRHIRRWFERYKKFTFDSYEPPKPTIYVLGKRKFIKKKVLNRPKGQKGPYIK*
Ga0115566_1000780715	F080524	AGGA	MHKEPNNDVKNFNQEFLETDWRKNRPQKYGFRMTDQKTLHKHQRLLPPELVKGKSILDIGSYISQTGDWCLNHGATKYTGVEIIKDFSDRGKELMQKYHTGENWNIVNCSLEDYFNNHKEKYDIIFCWGVSFSQIDHAWFIKNLCERCDHMALNWRHPKVMWNDNNKEISDELWKKLEYEIPYQEWQEDVMTQTAGKNASVFCSSVHTSIRAVQLLMKMNGFSSTTDSYEFFKTVMPEDMGMFKEKDRPGFFTIEATSDATVAKPNVFNEMVKNPEVWNEKWIDWS*
Ga0115566_100078074	F000413	N/A	VKKFYSIKLRQFKENIPPALAETMLLDESKLVKYLWNHKALEFRYPKHKGRLDLYADEKYLMMGKLKYPTIFGNRKRMGFMELYIVHRLNQRMNLARGSN*