Scaffold Ga0115566_10003698

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10003698
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12291
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008563	Metagenome / Metatranscriptome	331	Y
F010105	Metagenome / Metatranscriptome	308	Y
F012164	Metagenome / Metatranscriptome	283	Y
F014036	Metagenome / Metatranscriptome	266	Y
F100883	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_1000369811	F014036	AGGA	MILEFFGILFILLLSFVFHMVVYEDDWVKEWYWKVLIGGGILTVVFFAIMGY*
Ga0115566_1000369813	F012164	GGA	MSTELKKLKGKFHSSKTGKLENTELSLTRFSGGKEGMKLQLTLRDQGDFFTHIALNKEELKTLVKEIQENFDI*
Ga0115566_1000369815	F100883	AGAAG	MNFHNIIFKREDGLGGFRSTTHFQNGLKLSVSAGMGVYCTPREDLSSINQFLSFEIGIFDSDGEWVTKEFFPDHNDDVVGWLSRDEINDLMDRIANHGKPQKDIPGFEGTLDQLNNLKI*
Ga0115566_1000369817	F008563	N/A	MPKKYKIVSHMGIAFANIGGQKYLFPGWIPVEDHISFDDVEVTNPYDNIKKEIFQVTGSTGNKYTVTKNGNRLSCDCPAGKFRGTCKHSKQIAAELA*
Ga0115566_1000369819	F010105	N/A	MENLHTFESLNEAKKLDTIKKQVLDFAEKNGKSKWGDLQKHILTLKGLDPKDRDNRGQFSSYFSGGSSWQSKGKDTKLGRDANSHGLLMRPTKKDPRYLEKDGNEYVVKVWDGKSKLS*