Scaffold Ga0114973_10188941

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10188941
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1130
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F077230	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_101889411	F077230	N/A	MCIALILKRRLKLMRKWVRNGLILLVALSLLVVGQDKLFPPPVGRIPDGVISNRKATQDEKDRN
Ga0114973_101889412	F011646	AGGAG	VSNVLELRNGALKRIIFYEVSDAQNLAIWGGESPSEALKWYRESPLDSKIWVSEWLTDEEDAKEVSPQIEITSIVLSTIANCMERWSK*
Ga0114973_101889413	F011756	GAG	VSEPRYLSGDEFALSGGYEELANCNECNVLFDQVEYRSDTCSECEDKRVMREKESK*