Scaffold Ga0114973_10127508

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10127508
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1428
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011281	Metagenome / Metatranscriptome	292	Y
F019469	Metagenome	229	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_101275081	F011281	GGA	MSEFKQKVLTAAVDRYVLTPTQCMMLRQDAEVIGMKRATVMKKDGTTRRSFARSCSSCWVPMAPHYKWLYSIVNELTMAVNAEHYRF
Ga0114973_101275082	F020665	AGGA	MRKRKGKSIRVVKVEEYEAVKILVDVDDDLYEALAKAGRQHITKDKVACFTYALNKALLEMMEELK*
Ga0114973_101275083	F022371	AGGAG	MLCLLDLKDIVWVISWFILYSWIFLSIIYCAGYIILKLIDFIRKELDL*
Ga0114973_101275085	F019469	N/A	QYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSEDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNIMAHLWEIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVELGR*