Scaffold Ga0114973_10086112

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10086112
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1800
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053831	Metagenome / Metatranscriptome	140	N
F063331	Metagenome / Metatranscriptome	129	Y
F088345	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100861121	F063331	GGAG	MTELDHFALLNDLKSILDLIDNDELETARTELNDVIDRVQADCDERHRIYLERVERYMGHVDSALKDKK*
Ga0114973_100861122	F053831	GGTGG	MNYWQKLEYRGDGFQPFSIRLDYCHEDIAFRDMYAFDDDEEYIAKTEKEIEEGYRYFVILRAKVYLAGVEVGSHSLGGLLFDNTEQMESMMKTDFEGIISEAVANAKHNLRQMSEAMSGVTV*
Ga0114973_100861123	F088345	GAG	MSRKYYRVKKMDELERFFLPSDIQSWILRYNAGSEQALVKQVPLTPENISMIDRLAGMMLITRRYRGPRHNSRNFTRDCPKADAERVSIYLKERVA*