Scaffold Ga0114973_10018673

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10018673
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4340
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048854	Metagenome	147	Y
F053996	Metagenome	140	Y
F074591	Metagenome / Metatranscriptome	119	Y
F086842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1001867315	F074591	AGG	MMKNLPWTPRARMIGLFIQATACAGVWWLLFVGTWFALGGK*
Ga0114973_100186735	F048854	AGAAGG	MEYKEPKENKDNMLTLRLNEEQMLAVRQWAHQHNTNISTVIRSAIELMTGARQ*
Ga0114973_100186736	F053996	N/A	MAEHALFKNHDAVSPVDWPKVWETTDNIDAPEFDHHKLVMVAVLEFLCGSEMAEVSLDEIASLPDLEREAVVEALRMKWSKVELQENL*
Ga0114973_100186739	F086842	AGGAG	MNKAEVGKVLAIAVAIDARLGASDESGFRAKVEGWSLALSPAMDYEFAREALGKHYKNATESIMPAHLNSMWNSSRKHQQDSENILAIGSTQKSQGMPEAIRNQLRSIGLIND*