Scaffold Ga0114973_10013858

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10013858
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5124
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033329	Metagenome	177	N
F065376	Metagenome	127	Y
F085061	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100138584	F065376	N/A	MNAANIENLSEFYKALNSTEVLRAQGMIAAAPQIIEDKLSYDMSAESIKAANDAIKHIETNRKMVTLPLDAFKKSIMDVERDATASLKAYIDHRKAMMIEYSNELAVKKAVADAKIAQEATDALKSAVTSDVSGIFATFTDATTTTTLELDHTKNIRISKKAEIVGEVDWATVLWTLMRAEMFDMQEILRKLPKAMEITNIDSINGIEITEVKTQVIR*
Ga0114973_100138585	F085061	N/A	MSPFDNIHHEFTQFNRYLDTIIDPRECDNDTMEAKVKEAIIQAYSNGYHDGQKAIFDRLPKPMASGGDQGGRDYYDSL*
Ga0114973_100138588	F033329	GAG	MSRDIYNSIEAINASSIKRHFTGSIQYAAGALERGAEFHRNLLETDPKDMPPNARLIYDAIMKHPMLKLVFEKSAKEITFIKEIEIDGRKIAAKGILDLHCPMYSINADIKTTSCTNLRAFASDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIHRHTTEEIDTAENLIREYLVHRGL*