Scaffold Ga0114973_10005914

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10005914
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8273
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010014	Metagenome	309	Y
F018866	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100059145	F018866	N/A	MDSQRHNKTHKKPFNDIENPVGEADNNFKNLLEDSAREAYSRPWHRIERGLRLNRLRIFIEEVGPQFTMTKDEKDAFFIFLQKALDKKLLNTLKVVNYDQEKQRITIIRGLEIKRNQEGILKWGFSTKKPRADGTRKKKKDDIPSVSTHGEESTETKIEDEVNQIINN*
Ga0114973_100059147	F010014	AGTAGG	MAQPVFPDKHTISAYDAFPMPQFMTRTRREVDTIDAINARQFEHWQTDGKYGVMNRPDINKQAPFYDMLPNDSRGSDKSYRSQPRFDVDASRGVQNPYFDKYDTTFDARNMTRELRASVYEDKHTGYLKESEKLLQRNFDNRWLNPNVVAQQAQAAEQLRPKMDDIRLFYNNKPSADTSNKLNFNFNC*