Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10004891 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10004891 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9213
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (78.26%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9213

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (78.26%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037565	Metagenome / Metatranscriptome	167	Y
F044453	Metagenome / Metatranscriptome	154	Y
F050331	Metagenome / Metatranscriptome	145	N
F078205	Metagenome / Metatranscriptome	116	Y
F091941	Metagenome / Metatranscriptome	107	N
F105052	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000489113	F044453	AGAAGG	MEIKFLVKDEDGEFLTRQQVIDRLCQYDVYLLMKNIDQQDYSWLSDTREHGFKGYANYSDDELKEEWSESEDGWRGMIADEEQPYEIVSTAGV*
Ga0114973_1000489118	F105052	AGGAG	MSHLDEKQALIDIIKGEEKIYSQMVYTMGFQRLVKATSKEEAISKFQNDHIDVIADDENVDCDDHSEVVETDLEVTELYGE*
Ga0114973_1000489121	F091941	AGGAG	MTRIQFDMNRLKREFTRESLQAWAEFLAECNRANFYYKTDGWSQGELVDFDDTGFAEMELKWGNDENNHEQYSDLVEYDTEKFYHEFDRMKEKLMTNPEEIVR*
Ga0114973_1000489122	F050331	AGGAG	MKKNSKKEADREVAIQWLVDKDFDYITYSDGGGLELLRSILDSGFKGYGNYTDRELNEAIVERKELERMWG*
Ga0114973_100048917	F037565	N/A	MISDTKILSIDEIYDLILESYFRGELTEGEWMMSPAGVVKVFETECLKHGHSVADYTLYNTSLADECECHIDKLRTKFI*
Ga0114973_100048918	F078205	N/A	MDLISIVSGILSWLQVSTGQATITAGTIYQGAVVIDKVTTEDFRGTWTAELQEQGIQTIKGFIIKVENTND*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10004891

Overview

Ecosystem & Geography

Associated Families

Sequences