Scaffold Ga0114973_10002992

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10002992
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12086
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (91.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella biformis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041160	Metagenome	160	Y
F074790	Metagenome	119	N
F103148	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000299210	F041160	AGGAGG	MATKDVKVNEVEIVNGVPVVRGTAADVAFEAAPFRWGSKMLMKVEAEGLDRGTRIAVGHAAKKAIKAAGLTLPEAVLKRPRKAKEVVVAEVVIEVEVEEGSEA*
Ga0114973_1000299212	F103148	AGGAGG	MTRKFTNKLLEAMDEGMINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0114973_1000299234	F074790	AGGAGG	MAHFDTSLVFEAITNEVLADHETNRQIIELIEDTRDTERGAEGDRQQLVWGVLELALRQMAKSQHGHDLVVGLVDRLMEESRADMLARLELTVAGFTPVEINETLAEFPEVAGKYMRPTRAELDAAGPI*