Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10002197 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009068 Open in IMG/M

Scaffold ID

Ga0114973_10002197 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14315
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (57.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14315

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (57.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F012569	Metagenome / Metatranscriptome	279	N
F055684	Metagenome / Metatranscriptome	138	N
F078641	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000219710	F003112	N/A	MKRIATWITVLGLRLLLTAKDYACFMEALKCAEDNNRLARGTKYIGAVKHLLSVNRSIKRMVADGRDRDEVVGAVVHLAVSLKYLESRNE*
Ga0114973_1000219711	F078641	GGAG	MSEDQVWGIEVKLARMEERQVQLYNMVETSLSNYADVVNRVSALEHLRSRIFAIAGVAGLLFSVAWDLVKNRINH*
Ga0114973_1000219715	F055684	AGGAG	MWITTENNIIRQPEGIRIGDVNHPASIFWCWSKEQLAEVGIKPYTPASVPAGYRVTGAYTEEIDGEVFERFNLEPIPEPEPAPQEPVNDSI*
Ga0114973_1000219716	F000635	AGGAG	MTLSEIAQFAGEKVGKTDSDTLTFLEKSASLNYRRVWNFAPWRESITNSTYSVSTASRTITLGSLVENPLSVAYGDSELLSVDMQTIISQDADLLDNDRTGTPTQYYFKGRNTSGTAEIDLYPLLNTTSTTTIKVIEKLTCITRQNNIVEFPPSEPALDDELRLPHVQHVVLALTHADALERERQYAKAQAVVSTANADLAQMAQYEMSQVGGIKVITPSSLGEYSITDIGV*
Ga0114973_1000219718	F002149	GAG	MTAIEYIEASGVPEGMWHNLADWFNWFERQGLVGIVKDSDGIAGIALARCLKDGEKPDHYVHSEDGENVFVDLTISSKGAISLRCLLVLLLERFGIRKRITFNRSGTPRSYDFMKFMRRALR*
Ga0114973_100021976	F012569	N/A	MSADTDRFGARNGFTVGTTGVSGQAYWAIQMLADTTFSAIAGDFDGTLTGVTIGSGNIIYGQFNSFTAGTGRVIAYKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114973_10002197

Overview

Ecosystem & Geography

Associated Families

Sequences