Scaffold Ga0114973_10001554

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10001554
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17026
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F023341	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100015541	F023341	GGA	MPVYEYKCSYDDAHPIMSTHRSIKDEDPGYTCVECESVMTRHFTPFGIQFKGNGFYKTDNPN*
Ga0114973_1000155411	F000376	GGAG	MSEYQERAKECKCCTKHVPLPTILKRYNNITLCPTTYYNVIEYKRIWKSYGSKPAGNVRKHFSEYVQEIVESSIDIQG*
Ga0114973_1000155414	F000369	AGAAG	MTEIEPSIHFDKMNKVVSELLKGNSATQIATITGMSRKDVLEYIDEWKSVVHNDTNVRDRAREALMGADQHYDILIKEAWKTVEDADTQGQLNVKSGTLKLIADIEGKRIAMLQAVGVLENNEIASQILENERKQEMLVSILKEVTSNCNHCKIEVAKRLSQITGIVEPIIISQEVADV*