Scaffold Ga0114973

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10001468 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17615
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F009512	Metagenome	316	Y
F010226	Metagenome / Metatranscriptome	306	Y
F017466	Metagenome / Metatranscriptome	240	Y
F021290	Metagenome / Metatranscriptome	219	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome

316

Metagenome / Metatranscriptome

306

Metagenome / Metatranscriptome

240

Metagenome / Metatranscriptome

219

Protein ID	Family	RBS	Sequence
Ga0114973_1000146816	F010226	AGG	MAIQVIKDTAGNVLWTTDKAEINSESNNVTYQVFATALGTANAVGNLYANTVSVPNGTIQEIYVGAGNYLIMTGTNFTVRALGTASSARAGVYNAAGS*
Ga0114973_1000146817	F021290	GGA	VRAREFIAEGSRDIARSPAAHDFERAHPGVVGPSDDKDIYWGRYYDFYRVSTLAGMSPDEIAKVDDISFFGNLPLFSAYTEYDRKKLKAIMKKLGMKPKDYISSGSHETDNTNSTSPVTAFKGYNK*
Ga0114973_1000146819	F017466	AGGA	MRAREFVAEAKFGSAQDVPANAKKLPNHQATAIKGAISMPDISMTKQGGSPYTQWRFGIAMAGAPDFPTPAAGAFAGDPLLATYTDVDLDIINAAAKSVGAGRVTKLTDNRSTEHEAVYKTSPVKGFKGYPR*
Ga0114973_100014683	F009512	N/A	MDELFQRLDQAEKAIATVKNKVARRDLLKMTRAVDRAVVAADMESVECRRLKRETSRYKELVQKVHNLLTNLEQHITFANLLG*

Protein ID

Family

RBS

Sequence

Ga0114973_1000146816

AGG

MAIQVIKDTAGNVLWTTDKAEINSESNNVTYQVFATALGTANAVGNLYANTVSVPNGTIQEIYVGAGNYLIMTGTNFTVRALGTASSARAGVYNAAGS*

Ga0114973_1000146817

GGA

VRAREFIAEGSRDIARSPAAHDFERAHPGVVGPSDDKDIYWGRYYDFYRVSTLAGMSPDEIAKVDDISFFGNLPLFSAYTEYDRKKLKAIMKKLGMKPKDYISSGSHETDNTNSTSPVTAFKGYNK*

Ga0114973_1000146819

AGGA

MRAREFVAEAKFGSAQDVPANAKKLPNHQATAIKGAISMPDISMTKQGGSPYTQWRFGIAMAGAPDFPTPAAGAFAGDPLLATYTDVDLDIINAAAKSVGAGRVTKLTDNRSTEHEAVYKTSPVKGFKGYPR*

Ga0114973_100014683

N/A

MDELFQRLDQAEKAIATVKNKVARRDLLKMTRAVDRAVVAADMESVECRRLKRETSRYKELVQKVHNLLTNLEQHITFANLLG*

NMPFamsDB