Basic Information | |
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Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10001468 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17615 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009512 | Metagenome | 316 | Y |
F010226 | Metagenome / Metatranscriptome | 306 | Y |
F017466 | Metagenome / Metatranscriptome | 240 | Y |
F021290 | Metagenome / Metatranscriptome | 219 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114973_1000146816 | F010226 | AGG | MAIQVIKDTAGNVLWTTDKAEINSESNNVTYQVFATALGTANAVGNLYANTVSVPNGTIQEIYVGAGNYLIMTGTNFTVRALGTASSARAGVYNAAGS* |
Ga0114973_1000146817 | F021290 | GGA | VRAREFIAEGSRDIARSPAAHDFERAHPGVVGPSDDKDIYWGRYYDFYRVSTLAGMSPDEIAKVDDISFFGNLPLFSAYTEYDRKKLKAIMKKLGMKPKDYISSGSHETDNTNSTSPVTAFKGYNK* |
Ga0114973_1000146819 | F017466 | AGGA | MRAREFVAEAKFGSAQDVPANAKKLPNHQATAIKGAISMPDISMTKQGGSPYTQWRFGIAMAGAPDFPTPAAGAFAGDPLLATYTDVDLDIINAAAKSVGAGRVTKLTDNRSTEHEAVYKTSPVKGFKGYPR* |
Ga0114973_100014683 | F009512 | N/A | MDELFQRLDQAEKAIATVKNKVARRDLLKMTRAVDRAVVAADMESVECRRLKRETSRYKELVQKVHNLLTNLEQHITFANLLG* |
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