NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10000781

Scaffold Ga0114973_10000781


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10000781 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23888
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F016152Metagenome / Metatranscriptome249Y
F025466Metagenome / Metatranscriptome201Y
F054668Metagenome / Metatranscriptome139Y
F075841Metagenome118N
F101146Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_1000078111F025466AGGAGMDKKKLEAIAMTYLRAGAAAIAALYLADPNRPLKEYLAAGIAAVAGPILKAIDPKATEFGRGAK*
Ga0114973_1000078114F054668AGGAGVGISTRQVTVTTAATALVDATQESEMVYLHSVSGTCYLGNSDVTTSTGYRMDNGDKIAIENKANGIWAITTTGTVIMNVMAIGK*
Ga0114973_1000078123F016152AGCAGVETGIDPGALMDAPDGILEAIVIYLKEKAKAANKHGQ*
Ga0114973_1000078124F004344AGGGGGMDGLNIKVKTTDGVEKTFSLRPRIIVEFEQKYGKGLTKLIGEEQKLEHIYYLGWLALRANGVVVKPFGPEFLDTLEGVQLDTDPNSESTETA*
Ga0114973_1000078127F101146AGGAGMTYTVISHREVCGKTTGEIITEKELQDAEVSAEALIAGNHIEASNKTSQIPSTKIETEEGATK*
Ga0114973_100007814F075841AGGAGMMKMDPKFVRRRRAVAIVIGLLLLSLFTFATRDVCWTGSGYGSCSSMIDEVIANGR*
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Institute for Fundamental Biomedical Research
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