Scaffold Ga0114973_10000186

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000186
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43760
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (87.80%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F002653	Metagenome	539	Y
F010672	Metagenome	300	Y
F021488	Metagenome	218	Y
F023041	Metagenome	211	Y
F025226	Metagenome	202	Y
F061549	Metagenome	131	Y
F085230	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000018630	F002653	AGGAG	MSYVEPDFAMTDEELHRRVEAMSDDEQEHFRLLIHKLVMCYGTGKAQGIVIIGRAEDALAGVVTLNCDEMEASQLMLAANDFFGFLNVLDAPPKENFN*
Ga0114973_1000018632	F021488	N/A	MSDISFNKEDFDRIFGIPKNEIRENYPVLRNAVLEEVALEFDAMRIAFGDTAHSFATYVRDMKT*
Ga0114973_1000018635	F010672	AGGAGG	MPDIQTAFKEALTKTLAHWDDEGETPSVRPVSTSFLQPTNPTQETPMKKMFGITNNISRVTFDYIKNNPGSTRKEVIEALDHQGFAGGSTSSLIAQMRRNNMIHETNGAYYADIPEYRPIKSLKAMKKMEQTPAPPKRKYTKRDVTGIGALLQAKLEAKPNEAALDASAAFSVGTPVNKRFVSLVRNREPQDVLKDMTVYQARELYDHLKQMFGG*
Ga0114973_1000018636	F023041	AGGAG	MKYTPYDTGKVKIGLTYTPPPPESTHESDWIQGILLGDRQGMDDLLLTTIQSLGLIAFIVIVMLITGGTSDA*
Ga0114973_1000018638	F085230	AGGAG	MKVKELIGYLKQCDPETEVYTFNDHEIREIECVDASMTEWVHLNLGEKQ*
Ga0114973_1000018639	F061549	AGGAG	MKYRVQVVMSYWQTVEVEADSRADAGSKAVYEFDITKAYVGEGESHAIELIDKAKYVVRNHNHTVLGVFDNEHDAEKDAEEYRFQTGNPAYVDKEHEDES*
Ga0114973_100001868	F025226	GGA	VREFWSIAWTIHNPSERHQQMSVWLTNNAKFCRSQDYVAIWNNLSEWAGTADSAELRTKVIHGYKDALEREKK*
Ga0114973_100001869	F001538	GAG	MIDTIKLFPTVQPSGYPDKHDLAQKKLEKQHEMNKANELAKKQQTQLQDIGFEIYCKKTVQDRLRMEIFQNRKLDIYV*