Scaffold Ga0114973_10000001

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10000001
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 198718
• Total Scaffold Genes: 216
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080817	Metagenome	114	Y
F093227	Metagenome	106	Y
F104370	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_10000001144	F080817	N/A	MPLYFGFPVTCQEAFRLLSLYFEQTKTDIMQKHMLTENMYMDCYFVDYANHVLKSKNVEMRVFYTDKGQCIVGYKIENANVFEKKFVKISEFAYTLEKLANRFWYEIKTIKCHENFTKITLEHMEDEPETVEGDEPYIIEFQH*
Ga0114973_10000001159	F093227	AGGA	MSMLPTTLWGAINRAKLDLRKYHLEDDHNKKEVLKKKAIESIKNADEVVGPGPHRFMSSRHNWRNEWLYLNYYEEDPTVGRYWEDDKVRWSLESIPKWAMNPDLKVQEPSFGYNPKVRGKRFVYVIRPELQQR*
Ga0114973_10000001177	F104370	N/A	MKWSILLLLANLLFSGGKNLTNSRTLIEHATTDHNFRKQFARSKLARGSALSNKCNSRCSAKIPCNKRCQLARDRYQLRLAEKKYKKDNVKKYTSSQLNQRYYSGQVTNGACNSRCRAAKALYEKQRIQYMKTFHEPCQNGHIKNTGSYNGKKLSDQGNPSGDSPGDKTTVGSYGGVAKGRPLGAPGDGQINWPNSAKYNWRTVCKSYSKILGPSKPPID*