Scaffold Ga0102854_1155913

Overview

Basic Information

• Taxon OID: 3300009058
• Scaffold ID: Ga0102854_1155913
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 654
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F026856	Metagenome	196	Y
F046906	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102854_11559131	F046906	GGA	MYDQKTDNQTKEASDRSERKANPLGNTNGQRNPVHLCIGYGNQLYAWPLGQRGGQRRNLQDDFTRFFYSYRRHDWIPEWYQAQSE*
Ga0102854_11559132	F001538	GAGG	MIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQTELQDLAFEIYTKKVVQERLRMEIFTNRKLDVYV*
Ga0102854_11559133	F026856	N/A	DFRVIWNNLSEWAGNSDSHQLRALVVHGYKEALEREKK*